Proteins

ISSNs: , 1097-0134

References in Proteins:

Title Authors Year
Effect of oxidatively damaged DNA on the active site preorganization during nucleotide incorporation in a high fidelity polymerase from Bacillus stearothermophilus. Venkatramani R, Radhakrishnan R 2008
Structural and energetic characterization of nucleic acid-binding to the fingers domain of Moloney murine leukemia virus reverse transcriptase. Crowther RL, Remeta DP, Minetti CA, Das D, Montano SP, Georgiadis MM 2004
Characterization of crystals of the thermostable DNA polymerase I from Thermus aquaticus. Urs UK, Sharkey DJ, Peat TS, Hendrickson WA, Murthy K 1995
Characterization of the active site of DNA polymerase beta by molecular dynamics and quantum chemical calculation. Rittenhouse RC, Apostoluk WK, Miller JH, Straatsma TP 2003
Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1. Matsumura H, Takahashi H, Inoue T, Yamamoto T, Hashimoto H, Nishioka M, Fujiwara S, Takagi M, Imanaka T, Kai Y 2006
Exploring the role of large conformational changes in the fidelity of DNA polymerase beta. Xiang Y, Goodman MF, Beard WA, Wilson SH, Warshel A 2008
Mutation of Phe102 to Ser in the carboxyl terminal helix of Escherichia coli thioredoxin affects the stability and processivity of T7 DNA polymerase. Chiu J, Tillett D, March PE 2006
A binding free energy decomposition approach for accurate calculations of the fidelity of DNA polymerases. Rucker R, Oelschlaeger P, Warshel A 2010
A domain of the Klenow fragment of Escherichia coli DNA polymerase I has polymerase but no exonuclease activity. Freemont PS, Ollis DL, Steitz TA, Joyce CM 1986
Structure and enzymatic properties of a chimeric bacteriophage RB69 DNA polymerase and single-stranded DNA binding protein with increased processivity. Sun S, Geng L, Shamoo Y 2006
Extreme free energy of stabilization of Taq DNA polymerase. Schoeffler AJ, Joubert AM, Peng F, Khan F, Liu CC, LiCata VJ 2004
Major subdomain rearrangement in HIV-1 reverse transcriptase simulated by molecular dynamics. Madrid M, Jacobo-Molina A, Ding J, Arnold E 1999
Molecular dynamics of HIV-1 reverse transcriptase indicates increased flexibility upon DNA binding. Madrid M, Lukin JA, Madura JD, Ding J, Arnold E 2001
The balance between the rates of incorporation and pyrophosphorolytic removal influences the HIV-1 reverse transcriptase bypass of an abasic site with deoxy-, dideoxy-, and ribonucleotides. Sharma B, Crespan E, Villani G, Maga G 2008
Molecular dynamics study of HIV-1 RT-DNA-Nevirapine complexes explains NNRTI inhibition, and resistance by connection mutations. Vijayan RS, Arnold E, Das K 2013
The stability of Taq DNA polymerase results from a reduced entropic folding penalty; identification of other thermophilic proteins with similar folding thermodynamics. Liu CC, LiCata VJ 2014
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