Unnatural imidazopyridopyrimidine:naphthyridine base pairs: selective incorporation and extension reaction by DNA polymerases.

Minakawa N, Ogata S, Takahashi M, Matsuda A
Nucleic Acids Symp Ser (Oxf) (2009), Volume , Page 125
PubMed entry Publisher's site

Abstract:

We describe herein the results of (i) enzymatic recognition for ...
We describe herein the results of (i) enzymatic recognition for imidazopyridopyrimidine (Im):naphthyridine (Na) base pairs and (ii) further primer extension reactions after the Im:Na base pairs by DNA polymerases. Among the base pairs examined, ImN(O):NaO(N) base pair was rather selectively recognized by Klenow fragment exo(-) [F(exo(-))]as complementary base. However, this DNA polymerase did not catalyze primer extension reactions after the ImN(O):NaO(N) base pair. Therefore, we carried out a screening of DNA polymerases to promote the primer extension reaction as well as to improve the selectivity of base pair recognition. As a result, a family B DNA polymerase, especially Deep Vent (exo(-)), seemed most promising for this purpose.

Polymerases:

PGBD Pol I

Topics:

Nucleotide Incorporation

Status:

new topics/pols set partial results complete validated

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