Molecular cell

(Mol Cell) ISSNs: , 1097-4164

References in Molecular cell:

Title Authors Year
USP47 is a deubiquitylating enzyme that regulates base excision repair by controlling steady-state levels of DNA polymerase β. Parsons JL, Dianova II, Khoronenkova SV, Edelmann MJ, Kessler BM, Dianov GL 2011
A structural solution for the DNA polymerase lambda-dependent repair of DNA gaps with minimal homology. Garcia-Diaz M, Bebenek K, Krahn JM, Blanco L, Kunkel TA, Pedersen LC 2004
HMGB1 is a cofactor in mammalian base excision repair. Prasad R, Liu Y, Deterding LJ, Poltoratsky VP, Kedar PS, Horton JK, Kanno S, Asagoshi K, Hou EW, Khodyreva SN, Lavrik OI, Tomer KB, Yasui A, Wilson SH 2007
Regulated proteolysis of DNA polymerase eta during the DNA-damage response in C. elegans. Kim SH, Michael WM 2008
Analysis of the Okazaki fragment distributions along single long DNAs replicated by the bacteriophage T4 proteins. Chastain PD, Makhov AM, Nossal NG, Griffith JD 2000
Arginine methylation regulates DNA polymerase beta. El-Andaloussi N, Valovka T, Toueille M, Steinacher R, Focke F, Gehrig P, Covic M, Hassa PO, Schär P, Hübscher U, Hottiger MO 2006
DNA polymerase epsilon catalytic domains are dispensable for DNA replication, DNA repair, and cell viability. Kesti T, Flick K, Keränen S, Syväoja JE, Wittenberg C 1999
Structures of DNA polymerase beta with active-site mismatches suggest a transient abasic site intermediate during misincorporation. Batra VK, Beard WA, Shock DD, Pedersen LC, Wilson SH 2008
Multiple mitochondrial DNA polymerases in Trypanosoma brucei. Klingbeil MM, Motyka SA, Englund PT 2002
DNA polymerase zeta introduces multiple mutations when bypassing spontaneous DNA damage in Saccharomyces cerevisiae. Harfe BD, Jinks-Robertson S 2000
Interaction of human DNA polymerase eta with monoubiquitinated PCNA: a possible mechanism for the polymerase switch in response to DNA damage. Kannouche PL, Wing J, Lehmann AR 2004
Crystal structure of a DinB lesion bypass DNA polymerase catalytic fragment reveals a classic polymerase catalytic domain. Zhou BL, Pata JD, Steitz TA 2001
Dynamic DNA helicase-DNA polymerase interactions assure processive replication fork movement. Hamdan SM, Johnson DE, Tanner NA, Lee JB, Qimron U, Tabor S, van Oijen AM, Richardson CC 2007
Structure of a preternary complex involving a prokaryotic NHEJ DNA polymerase. Brissett NC, Martin MJ, Pitcher RS, Bianchi J, Juarez R, Green AJ, Fox GC, Blanco L, Doherty AJ 2011
Insights into strand displacement and processivity from the crystal structure of the protein-primed DNA polymerase of bacteriophage phi29. Kamtekar S, Berman AJ, Wang J, Lázaro JM, de Vega M, Blanco L, Salas M, Steitz TA 2004
Characterization of a triple DNA polymerase replisome. McInerney P, Johnson A, Katz F, O'Donnell ME 2007
Human DNA polymerase kappa encircles DNA: implications for mismatch extension and lesion bypass. Lone S, Townson SA, Uljon SN, Johnson RE, Brahma A, Nair DT, Prakash S, Prakash L, Aggarwal AK 2007
Structure of the catalytic core of S. cerevisiae DNA polymerase eta: implications for translesion DNA synthesis. Trincao J, Johnson RE, Escalante CR, Prakash S, Prakash L, Aggarwal AK 2001
Snapshots of replication through an abasic lesion; structural basis for base substitutions and frameshifts. Ling H, Boudsocq F, Woodgate R, Yang WW 2004
UmuD and RecA directly modulate the mutagenic potential of the Y family DNA polymerase DinB. Godoy VG, Jarosz DF, Simon SM, Abyzov A, Ilyin VA, Walker GC 2007
Crystal structure and deletion analysis show that the accessory subunit of mammalian DNA polymerase gamma, Pol gamma B, functions as a homodimer. Carrodeguas JA, Theis K, Bogenhagen DF, Kisker C 2001
Mrc1 and DNA polymerase epsilon function together in linking DNA replication and the S phase checkpoint. Lou H, Komata M, Katou Y, Guan Z, Reis CC, Budd ME, Shirahige K, Campbell JL 2008
Bacteriophage T4 proteins replicate plasmids with a preformed R loop at the T4 ori(uvsY) replication origin in vitro. Nossal NG, Dudas KC, Kreuzer KN 2001
A mechanism of AZT resistance: an increase in nucleotide-dependent primer unblocking by mutant HIV-1 reverse transcriptase. Meyer PR, Matsuura SE, Mian AM, So AG, Scott WA 1999
Initiation of eukaryotic DNA replication: origin unwinding and sequential chromatin association of Cdc45, RPA, and DNA polymerase alpha. Walter J, Newport J 2000
The crystal structure of an unusual processivity factor, herpes simplex virus UL42, bound to the C terminus of its cognate polymerase. Zuccola HJ, Filman DJ, Coen DM, Hogle JM 2000
A biochemically defined system for mammalian nonhomologous DNA end joining. Ma Y, Lu H, Tippin B, Goodman MF, Shimazaki N, Koiwai O, Hsieh CL, Schwarz K, Lieber MR 2004
DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters. Sporbert A, Gahl A, Ankerhold R, Leonhardt H, Cardoso MC 2002
DNA polymerase V and RecA protein, a minimal mutasome. Schlacher K, Leslie K, Wyman C, Woodgate R, Cox MM, Goodman MF 2005
PCNA is required for initiation of recombination-associated DNA synthesis by DNA polymerase delta. Li X, Stith CM, Burgers PM, Heyer WD 2009
Unconventional ubiquitin recognition by the ubiquitin-binding motif within the Y family DNA polymerases iota and Rev1. Bomar MG, D'Souza S, Bienko M, Dikic I, Walker GC, Zhou P 2010
A gradient of template dependence defines distinct biological roles for family X polymerases in nonhomologous end joining. Nick McElhinny SA, Havener JM, Garcia-Diaz M, Juárez R, Bebenek K, Kee BL, Blanco L, Kunkel TA, Ramsden DA 2005
Unfaithful DNA polymerase caught in the act. Jiricny J 2004
Regulation of translesion synthesis DNA polymerase eta by monoubiquitination. Bienko M, Green CM, Sabbioneda S, Crosetto N, Matic I, Hibbert RG, Begovic T, Niimi A, Mann M, Lehmann AR, Dikic I 2010
Trading places: how do DNA polymerases switch during translesion DNA synthesis? Friedberg EC, Lehmann AR, Fuchs RP 2005
SOS mutator DNA polymerase IV functions in adaptive mutation and not adaptive amplification. McKenzie GJ, Lee PL, Lombardo MJ, Hastings PJ, Rosenberg SM 2001
Acetylation regulates the DNA end-trimming activity of DNA polymerase beta. Hasan S, El-Andaloussi N, Hardeland U, Hassa PO, Bürki C, Imhof R, Schär P, Hottiger MO 2002
Linear diffusion on DNA despite high-affinity binding by a DNA polymerase processivity factor. Randell JC, Coen DM 2001
Interaction with PCNA is essential for yeast DNA polymerase eta function. Haracska L, Kondratick CM, Unk I, Prakash S, Prakash L 2001
Division of labor at the eukaryotic replication fork. Nick McElhinny SA, Gordenin DA, Stith CM, Burgers PM, Kunkel TA 2008
Human DNA polymerase eta promotes DNA synthesis from strand invasion intermediates of homologous recombination. McIlwraith MJ, Mcllwraith MJ, Vaisman A, Liu Y, Fanning E, Woodgate R, West SC 2005
Mcm10 regulates the stability and chromatin association of DNA polymerase-alpha. Ricke RM, Bielinsky AK 2004
The dinB gene encodes a novel E. coli DNA polymerase, DNA pol IV, involved in mutagenesis. Wagner JE, Grúz P, Kim SR, Yamada M, Matsui K, Fuchs RP, Nohmi T 1999
Structural insights into the generation of single-base deletions by the Y family DNA polymerase dbh. Wilson RC, Pata JD 2008
The checkpoint clamp activates Mec1 kinase during initiation of the DNA damage checkpoint. Majka Jerzy, Niedziela-Majka Anita, Burgers PeterMJ 2006
The molecular chaperone Hsp90 regulates accumulation of DNA polymerase eta at replication stalling sites in UV-irradiated cells. Sekimoto T, Oda T, Pozo FM, Murakumo Y, Masutani C, Hanaoka F, Yamashita T 2010
RNase H2-Initiated Ribonucleotide Excision Repair. Sparks JL, Chon H, Cerritelli SM, Kunkel TA, Johansson E, Crouch RJ, Burgers PM 2012
Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair. Fan L, Arvai AS, Cooper PK, Iwai S, Hanaoka F, Tainer JA 2006
AP endonuclease-independent DNA base excision repair in human cells. Wiederhold L, Leppard JB, Kedar PS, Karimi-Busheri F, Rasouli-Nia A, Weinfeld M, Tomkinson AE, Izumi T, Prasad R, Wilson SH, Mitra S, Hazra TK 2004
Modular architecture of the bacteriophage T7 primase couples RNA primer synthesis to DNA synthesis. Kato M, Ito T, Wagner G, Richardson CC, Ellenberger T 2003
Coordinated leading and lagging strand DNA synthesis on a minicircular template. Lee J, Chastain PD, Kusakabe T, Griffith JD, Richardson CC 1998
Reconstitution of the B. subtilis replisome with 13 proteins including two distinct replicases. Sanders GM, Dallmann HG, McHenry CS 2010
The cytomegalovirus DNA polymerase subunit UL44 forms a C clamp-shaped dimer. Appleton BA, Loregian A, Filman DJ, Coen DM, Hogle JM 2004
Dual roles for DNA polymerase eta in homologous DNA recombination and translesion DNA synthesis. Kawamoto T, Araki K, Sonoda E, Yamashita YM, Harada K, Kikuchi K, Masutani C, Hanaoka F, Nozaki K, Hashimoto N, Takeda S 2005
Vertebrate POLQ and POLbeta cooperate in base excision repair of oxidative DNA damage. Yoshimura M, Kohzaki M, Nakamura J, Asagoshi K, Sonoda E, Hou EW, Prasad R, Wilson SH, Tano K, Yasui A, Lan L, Seki M, Wood RD, Arakawa H, Buerstedde JM, Hochegger H, Okada T, Hiraoka M, Takeda S 2006
Structural Basis for Telomerase RNA Recognition and RNP Assembly by the Holoenzyme La Family Protein p65. Singh M, Wang Z, Koo BK, Patel A, Cascio D, Collins K, Feigon J 2012
Ribonucleotides Are Signals for Mismatch Repair of Leading-Strand Replication Errors. Lujan SA, Williams JS, Clausen AR, Clark AB, Kunkel TA 2013
Replisome assembly at oriC, the replication origin of E. coli, reveals an explanation for initiation sites outside an origin. Fang L, Davey MJ, O'Donnell ME 1999
PrimPol, an Archaic Primase/Polymerase Operating in Human Cells. García-Gómez S, Reyes A, Martínez-Jiménez MI, Chocrón ES, Mourón S, Terrados G, Powell C, Salido E, Méndez J, Holt IJ, Blanco L 2013
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