T7
|
Characterization of a DNA polymerase from the hyperthermophile archaea Thermococcus litoralis. Vent DNA polymerase, steady state kinetics, thermal stability, processivity, strand displacement, and exonuclease activities.
|
Processivity
|
1kb
|
|
T7
|
Characterization of a DNA polymerase from the hyperthermophile archaea Thermococcus litoralis. Vent DNA polymerase, steady state kinetics, thermal stability, processivity, strand displacement, and exonuclease activities.
|
KM
|
18uM
|
Reaction: Nucleotide incorporation; Substrate: dNTPs; Technique: Filter binding ; Experimental conditions: Temp (72°C)
|
T7
|
Fidelity of DNA synthesis by the Thermococcus litoralis DNA polymerase--an extremely heat stable enzyme with proofreading activity.
|
3-5' Exonuclease (proofreading)
|
Yes
|
|
T7
|
Fidelity of DNA synthesis by the Thermococcus litoralis DNA polymerase--an extremely heat stable enzyme with proofreading activity.
|
Frameshift Error Rate
|
0.0015 errors/bp
|
Technique: Forward mutational (1mM dNTP)
|
T7
|
Fidelity of DNA synthesis by the Thermococcus litoralis DNA polymerase--an extremely heat stable enzyme with proofreading activity.
|
Nucleotide Substitution Rate
|
1.5E-05 errors/bp
|
Technique: Reversion (1mM dNTP)
|
T7
|
Deoxyribonucleic acid polymerase of bacteriophage T7.
|
3-5' Exonuclease (proofreading)
|
Yes
|
|
T7
|
Deoxyribonucleic acid polymerase of bacteriophage T7.
|
Cloned or native
|
Native organism
|
|
T7
|
Deoxyribonucleic acid polymerase of bacteriophage T7.
|
Tagged
|
No
|
|
T7
|
Deoxyribonucleic acid polymerase of bacteriophage T7.
|
Full length or truncated
|
Full length
|
|
T7
|
Bacteriophage T7 Deoxyribonucleic acid replication in vitro. A protein of Escherichia coli required for bacteriophage T7 DNA polymerase activity.
|
Cloned or native
|
Native organism
|
|
T7
|
Bacteriophage T7 Deoxyribonucleic acid replication in vitro. A protein of Escherichia coli required for bacteriophage T7 DNA polymerase activity.
|
Tagged
|
No
|
|
T7
|
Bacteriophage T7 Deoxyribonucleic acid replication in vitro. A protein of Escherichia coli required for bacteriophage T7 DNA polymerase activity.
|
Full length or truncated
|
Full length
|
|
T7
|
Bacteriophage T7 Deoxyribonucleic acid replication in vitro. A protein of Escherichia coli required for bacteriophage T7 DNA polymerase activity.
|
Specific Activity
|
4100 units/mg
|
|
T7
|
Bacteriophage T7 Deoxyribonucleic acid replication in vitro. A protein of Escherichia coli required for bacteriophage T7 DNA polymerase activity.
|
Other accessory protein(s)
|
TsnC protein (thioredoxin)
|
|
T7
|
Bacteriophage T7 deoxyribonucleic acid replication invitro. Bacteriophage T7 DNA polymerase: an an emzyme composed of phage- and host-specific subunits.
|
Molecular Weight
|
9.6E+04 Dalton
|
Technique: SDS-PAGE (2 subunits: 84 kD gene 5 protein + 12 kD TsnC protein)
|
T7
|
Bacteriophage T7 deoxyribonucleic acid replication invitro. Bacteriophage T7 DNA polymerase: an an emzyme composed of phage- and host-specific subunits.
|
Cloned or native
|
Native organism
|
|
T7
|
Bacteriophage T7 deoxyribonucleic acid replication invitro. Bacteriophage T7 DNA polymerase: an an emzyme composed of phage- and host-specific subunits.
|
Tagged
|
No
|
|
T7
|
Bacteriophage T7 deoxyribonucleic acid replication invitro. Bacteriophage T7 DNA polymerase: an an emzyme composed of phage- and host-specific subunits.
|
Full length or truncated
|
Full length
|
|
T7
|
Bacteriophage T7 deoxyribonucleic acid replication invitro. Bacteriophage T7 DNA polymerase: an an emzyme composed of phage- and host-specific subunits.
|
Specific Activity
|
1750 units/mg
|
|
T7
|
Deoxyribonucleic acid polymerase of bacteriophage T7. Purification and properties of the phage-encoded subunit, the gene 5 protein.
|
3-5' Exonuclease (proofreading)
|
Yes
|
|
T7
|
Deoxyribonucleic acid polymerase of bacteriophage T7. Purification and properties of the phage-encoded subunit, the gene 5 protein.
|
Cloned or native
|
Native organism
|
|
T7
|
Deoxyribonucleic acid polymerase of bacteriophage T7. Purification and properties of the phage-encoded subunit, the gene 5 protein.
|
3-5' Exo Specific Activity
|
0.13 umol/min/mg
|
|
T7
|
Deoxyribonucleic acid polymerase of bacteriophage T7. Purification and properties of the phage-encoded subunit, the gene 5 protein.
|
Tagged
|
No
|
|
T7
|
Deoxyribonucleic acid polymerase of bacteriophage T7. Purification and properties of the phage-encoded subunit, the gene 5 protein.
|
Full length or truncated
|
Full length
|
|
T7
|
Deoxyribonucleic acid polymerase of bacteriophage T7. Purification and properties of the phage-encoded subunit, the gene 5 protein.
|
Specific Activity
|
0.427 umol/min/mg
|
|
T7
|
Deoxyribonucleic acid polymerase of bacteriophage T7. Purification and properties of the phage-encoded subunit, the gene 5 protein.
|
KM
|
48nM
|
Reaction: 3-5' Exonuclease; Substrate: DNA template
|
T7
|
Deoxyribonucleic acid polymerase of bacteriophage T7. Purification and properties of the phage-encoded subunit, the gene 5 protein.
|
Isoelectric Point
|
pH 5.9
|
|
T7
|
Deoxyribonucleic acid polymerase of bacteriophage T7. Purification and properties of the phage-encoded subunit, the gene 5 protein.
|
Other accessory protein(s)
|
E. coli thioredoxin
|
|
T7
|
Characterization of bacteriophage T7 DNA polymerase purified to homogeneity by antithioredoxin immunoadsorbent chromatography.
|
Molecular Weight
|
112kD
|
|
T7
|
Characterization of bacteriophage T7 DNA polymerase purified to homogeneity by antithioredoxin immunoadsorbent chromatography.
|
3-5' Exonuclease (proofreading)
|
Yes
|
|
T7
|
Characterization of bacteriophage T7 DNA polymerase purified to homogeneity by antithioredoxin immunoadsorbent chromatography.
|
Cloned or native
|
Cloned in E. coli
|
|
T7
|
Characterization of bacteriophage T7 DNA polymerase purified to homogeneity by antithioredoxin immunoadsorbent chromatography.
|
3-5' Exo Specific Activity
|
2.4E+04 units/mg
|
|
T7
|
Characterization of bacteriophage T7 DNA polymerase purified to homogeneity by antithioredoxin immunoadsorbent chromatography.
|
Tagged
|
No
|
|
T7
|
Characterization of bacteriophage T7 DNA polymerase purified to homogeneity by antithioredoxin immunoadsorbent chromatography.
|
Full length or truncated
|
Full length
|
|
T7
|
Characterization of bacteriophage T7 DNA polymerase purified to homogeneity by antithioredoxin immunoadsorbent chromatography.
|
Specific Activity
|
5150 units/mg
|
|
T7
|
Characterization of bacteriophage T7 DNA polymerase purified to homogeneity by antithioredoxin immunoadsorbent chromatography.
|
Other accessory protein(s)
|
E. coli thioredoxin
|
|
T7
|
T7-induced DNA polymerase. Characterization of associated exonuclease activities and resolution into biologically active subunits.
|
3-5' Exonuclease (proofreading)
|
Yes
|
|
T7
|
T7-induced DNA polymerase. Characterization of associated exonuclease activities and resolution into biologically active subunits.
|
Cloned or native
|
Native organism
|
|
T7
|
T7-induced DNA polymerase. Characterization of associated exonuclease activities and resolution into biologically active subunits.
|
3-5' Exo Specific Activity
|
2580 units/mg
|
|
T7
|
T7-induced DNA polymerase. Characterization of associated exonuclease activities and resolution into biologically active subunits.
|
Tagged
|
No
|
|
T7
|
T7-induced DNA polymerase. Characterization of associated exonuclease activities and resolution into biologically active subunits.
|
Full length or truncated
|
Full length
|
|
T7
|
T7-induced DNA polymerase. Characterization of associated exonuclease activities and resolution into biologically active subunits.
|
Specific Activity
|
3370 units/mg
|
|
T7
|
T7-induced DNA polymerase. Characterization of associated exonuclease activities and resolution into biologically active subunits.
|
Other accessory protein(s)
|
E. coli thioredoxin
|
|
T7
|
T7-induced DNA polymerase. Requirement for thioredoxin sulfhydryl groups.
|
Molecular Weight
|
9.2E+04 Dalton
|
|
T7
|
T7-induced DNA polymerase. Requirement for thioredoxin sulfhydryl groups.
|
3-5' Exonuclease (proofreading)
|
Yes
|
|
T7
|
T7-induced DNA polymerase. Requirement for thioredoxin sulfhydryl groups.
|
Cloned or native
|
Native organism
|
|
T7
|
T7-induced DNA polymerase. Requirement for thioredoxin sulfhydryl groups.
|
3-5' Exo Specific Activity
|
9.1 umol/min/mg
|
|
T7
|
T7-induced DNA polymerase. Requirement for thioredoxin sulfhydryl groups.
|
Tagged
|
No
|
|
T7
|
T7-induced DNA polymerase. Requirement for thioredoxin sulfhydryl groups.
|
Full length or truncated
|
Full length
|
|
T7
|
T7-induced DNA polymerase. Requirement for thioredoxin sulfhydryl groups.
|
Specific Activity
|
10.7 units/mg
|
|
T7
|
T7-induced DNA polymerase. Requirement for thioredoxin sulfhydryl groups.
|
Other accessory protein(s)
|
E. coli thioredoxin
|
|
T7
|
Characterization of strand displacement synthesis catalyzed by bacteriophage T7 DNA polymerase.
|
3-5' Exonuclease (proofreading)
|
Yes
|
|
T7
|
Characterization of strand displacement synthesis catalyzed by bacteriophage T7 DNA polymerase.
|
Cloned or native
|
Native organism
|
|
T7
|
Characterization of strand displacement synthesis catalyzed by bacteriophage T7 DNA polymerase.
|
Tagged
|
No
|
|
T7
|
Characterization of strand displacement synthesis catalyzed by bacteriophage T7 DNA polymerase.
|
Full length or truncated
|
Full length
|
|
T7
|
Characterization of strand displacement synthesis catalyzed by bacteriophage T7 DNA polymerase.
|
Specific Activity
|
1.08E+04 units/mg
|
|
T7
|
Characterization of strand displacement synthesis catalyzed by bacteriophage T7 DNA polymerase.
|
Specific Activity
|
5800 units/mg
|
|
T7
|
Characterization of strand displacement synthesis catalyzed by bacteriophage T7 DNA polymerase.
|
Nick Extension
|
No
|
|
T7
|
Characterization of strand displacement synthesis catalyzed by bacteriophage T7 DNA polymerase.
|
Other accessory protein(s)
|
E. coli thioredoxin
|
|
T7
|
Two forms of the DNA polymerase of bacteriophage T7.
|
Molecular Weight
|
9.6E+04 Dalton
|
|
T7
|
Two forms of the DNA polymerase of bacteriophage T7.
|
Cloned or native
|
Cloned in E. coli
|
|
T7
|
Two forms of the DNA polymerase of bacteriophage T7.
|
5-3' Exonuclease
|
Yes
|
|
T7
|
Two forms of the DNA polymerase of bacteriophage T7.
|
Tagged
|
No
|
|
T7
|
Two forms of the DNA polymerase of bacteriophage T7.
|
Nucleotide Substitution Rate
|
0.028 errors/bp
|
|
T7
|
Two forms of the DNA polymerase of bacteriophage T7.
|
Nucleotide Substitution Rate
|
0.045 errors/bp
|
|
T7
|
Two forms of the DNA polymerase of bacteriophage T7.
|
Full length or truncated
|
Full length
|
|
T7
|
Two forms of the DNA polymerase of bacteriophage T7.
|
Extension from RNA primer
|
Yes
|
|
T7
|
Two forms of the DNA polymerase of bacteriophage T7.
|
Specific Activity
|
5800 units/mg
|
|
T7
|
Two forms of the DNA polymerase of bacteriophage T7.
|
Specific Activity
|
1.03E+04 units/mg
|
|
T7
|
Two forms of the DNA polymerase of bacteriophage T7.
|
Nick Extension
|
No
|
|
T7
|
Two forms of the DNA polymerase of bacteriophage T7.
|
Other accessory protein(s)
|
E. coli thioredoxin
|
|
T7
|
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant.
|
3-5' Exonuclease (proofreading)
|
Yes
|
|
T7
|
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant.
|
Cloned or native
|
Cloned in E. coli
|
|
T7
|
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant.
|
Full length or truncated
|
Full length
|
|
T7
|
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant.
|
Processivity
|
1500bp
|
|
T7
|
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant.
|
KM
|
690nM
|
Reaction: 3-5' Exonuclease; Substrate: DNA template
|
T7
|
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant.
|
Vmax
|
287 /second
|
Reaction: Nucleotide incorporation; Substrate: dNTPs
|
T7
|
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant.
|
Vmax
|
105 /second
|
Reaction: 3-5' Exonuclease
|
T7
|
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant.
|
Kd
|
23nM
|
Reaction: Polymerase-DNA interaction; Substrate: DNA template
|
T7
|
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant.
|
Kd
|
18uM
|
Reaction: Nucleotide incorporation; Substrate: dNTPs
|
T7
|
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant.
|
Kd
|
2000uM
|
Reaction: Pyrophosphorolysis
|
T7
|
Expression, purification, and initial kinetic characterization of the large subunit of the human mitochondrial DNA polymerase.
|
Processivity
|
1500bp
|
|
T7
|
Expression, purification, and initial kinetic characterization of the large subunit of the human mitochondrial DNA polymerase.
|
Vmax
|
300 /second
|
Reaction: Nucleotide incorporation; Substrate: dNTPs
|
T7
|
Expression, purification, and initial kinetic characterization of the large subunit of the human mitochondrial DNA polymerase.
|
Kd
|
18nM
|
Reaction: Polymerase-DNA interaction; Substrate: DNA template
|
T7
|
Expression, purification, and initial kinetic characterization of the large subunit of the human mitochondrial DNA polymerase.
|
Kd
|
18uM
|
Reaction: Nucleotide incorporation; Substrate: dNTPs
|
T7
|
Single-molecule studies of the effect of template tension on T7 DNA polymerase activity.
|
3-5' Exonuclease (proofreading)
|
Yes
|
|
T7
|
Single-molecule studies of the effect of template tension on T7 DNA polymerase activity.
|
Full length or truncated
|
Full length
|
|
T7
|
Single-molecule studies of the effect of template tension on T7 DNA polymerase activity.
|
Processivity
|
420bp
|
|
T7
|
Single-molecule studies of the effect of template tension on T7 DNA polymerase activity.
|
Vmax
|
100 /second
|
Reaction: Nucleotide incorporation; Substrate: dNTPs
|
T7
|
Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7.
|
Cloned or native
|
Cloned in E. coli
|
|
T7
|
Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7.
|
Tagged
|
No
|
|
T7
|
Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7.
|
Full length or truncated
|
Full length
|
|
T7
|
Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7.
|
Processivity
|
10kb
|
|
T7
|
Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7.
|
Specific Activity
|
8300 units/mg
|
Technique: Polymerase Assay (calf thymus DNA)
|
T7
|
Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7.
|
Specific Activity
|
5.3E+04 units/mg
|
Technique: Polymerase Assay (M13 DNA)
|
T7
|
Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7.
|
Vmax
|
100 /second
|
Reaction: Nucleotide incorporation; Substrate: dNTPs
|
T7
|
The thioredoxin binding domain of bacteriophage T7 DNA polymerase confers processivity on Escherichia coli DNA polymerase I.
|
3-5' Exonuclease (proofreading)
|
Yes
|
|
T7
|
The thioredoxin binding domain of bacteriophage T7 DNA polymerase confers processivity on Escherichia coli DNA polymerase I.
|
Processivity
|
300bp
|
|
T7
|
The thioredoxin binding domain of bacteriophage T7 DNA polymerase confers processivity on Escherichia coli DNA polymerase I.
|
Specific Activity
|
1E+04 units/mg
|
Technique: Polymerase Assay (M13 DNA)
|
T7
|
Error-prone replication of repeated DNA sequences by T7 DNA polymerase in the absence of its processivity subunit.
|
3-5' Exonuclease (proofreading)
|
Yes
|
|
T7
|
Error-prone replication of repeated DNA sequences by T7 DNA polymerase in the absence of its processivity subunit.
|
Cloned or native
|
Native organism
|
|
T7
|
Error-prone replication of repeated DNA sequences by T7 DNA polymerase in the absence of its processivity subunit.
|
5-3' Exonuclease
|
Yes
|
|
T7
|
Error-prone replication of repeated DNA sequences by T7 DNA polymerase in the absence of its processivity subunit.
|
Tagged
|
No
|
|
T7
|
Error-prone replication of repeated DNA sequences by T7 DNA polymerase in the absence of its processivity subunit.
|
Frameshift Error Rate
|
3.7E-07 errors/bp
|
Technique: M13mp2 forward mutation assay (+1 reading frame)
|
T7
|
Error-prone replication of repeated DNA sequences by T7 DNA polymerase in the absence of its processivity subunit.
|
Frameshift Error Rate
|
4.5E-07 errors/bp
|
Technique: M13mp2 forward mutation assay (-1 reading frame)
|
T7
|
Error-prone replication of repeated DNA sequences by T7 DNA polymerase in the absence of its processivity subunit.
|
Nucleotide Substitution Rate
|
2.2E-06 errors/bp
|
Technique: M13mp2 forward mutation assay
|
T7
|
Error-prone replication of repeated DNA sequences by T7 DNA polymerase in the absence of its processivity subunit.
|
Full length or truncated
|
Full length
|
|
T7
|
Error-prone replication of repeated DNA sequences by T7 DNA polymerase in the absence of its processivity subunit.
|
Nucleotide incorporation accessory protein(s)
|
Thioredoxin
|
|
T7
|
Amino acid changes in a unique sequence of bacteriophage T7 DNA polymerase alter the processivity of nucleotide polymerization.
|
Full length or truncated
|
Full length
|
|
T7
|
Amino acid changes in a unique sequence of bacteriophage T7 DNA polymerase alter the processivity of nucleotide polymerization.
|
Processivity
|
7000bp
|
|
T7
|
Thermostable DNA polymerases.
|
3-5' Exonuclease (proofreading)
|
Yes
|
|
T7
|
Thermostable DNA polymerases.
|
Full length or truncated
|
Full length
|
|
T7
|
Thermostable DNA polymerases.
|
Vmax
|
700 /second
|
Reaction: 3-5' Exonuclease
|
T7
|
Thermostable DNA polymerases.
|
Vmax
|
330 /second
|
Reaction: Nucleotide incorporation; Substrate: dNTPs
|
T7
|
Pre-steady-state kinetic studies of the fidelity of Sulfolobus solfataricus P2 DNA polymerase IV.
|
Overall Error Rate
|
2.6E-07 errors/bp
|
|
T7
|
Pre-steady-state kinetic studies of the fidelity of Sulfolobus solfataricus P2 DNA polymerase IV.
|
Overall Error Rate
|
6.7E-06 errors/bp
|
|
T7
|
Bypass of a nick by the replisome of bacteriophage T7.
|
Nucleotide incorporation accessory protein(s)
|
Helicase
|
|
T7
|
Yeast mitochondrial DNA polymerase is a highly processive single-subunit enzyme.
|
Processivity
|
257bp
|
|
T7
|
Yeast mitochondrial DNA polymerase is a highly processive single-subunit enzyme.
|
Strand Displacement
|
No
|
|
T7
|
Processive proofreading and the spatial relationship between polymerase and exonuclease active sites of bacteriophage phi29 DNA polymerase.
|
3-5' Exonuclease (proofreading)
|
Yes
|
|
T7
|
An Interaction between DNA Polymerase and Helicase is Essential for the High Processivity of the Bacteriophage T7 Replisome.
|
Other accessory protein(s)
|
helicase
|
|
T7
|
Replication, Repair and Translesion Polymerase Bypass of N6-Oxopropenyl-2'-deoxyadenosine.
|
Template lesions
|
Idles
|
Reaction: Nucleotide incorporation; Substrate: dTTP; DNA lesion: OPdA
|