Molecular and cellular biology

(Mol Cell Biol) ISSNs: 0270-7306,

References in Molecular and cellular biology:

Title Authors Year
Transfected human beta-polymerase promoter contains a ras-responsive element. Kedar PS, Lowy DR, Widen SG, Wilson SH 1990
Human DNA polymerase iota promotes replication through a ring-closed minor-groove adduct that adopts a syn conformation in DNA. Wolfle WT, Johnson RE, Minko IG, Lloyd RS, Prakash S, Prakash L 2005
DNA primase-DNA polymerase alpha from simian cells: sequence specificity of initiation sites on simian virus 40 DNA. Yamaguchi M, Hendrickson EA, DePamphilis ML 1985
Sequencing of Saccharomyces telomeres cloned using T4 DNA polymerase reveals two domains. Wang SS, Zakian VA 1990
UV-B radiation induces epithelial tumors in mice lacking DNA polymerase eta and mesenchymal tumors in mice deficient for DNA polymerase iota. Ohkumo T, Kondo Y, Yokoi M, Tsukamoto T, Yamada A, Sugimoto T, Kanao R, Higashi Y, Kondoh H, Tatematsu M, Masutani C, Hanaoka F 2006
The N-terminal noncatalytic region of Xenopus RecQ4 is required for chromatin binding of DNA polymerase alpha in the initiation of DNA replication. Matsuno K, Kumano M, Kubota Y, Hashimoto Y, Takisawa H 2006
A unique subpopulation of murine DNA polymerase alpha/primase specifically interacts with polyomavirus T antigen and stimulates DNA replication. Moses K, Prives C 1994
Hypermutability of homonucleotide runs in mismatch repair and DNA polymerase proofreading yeast mutants. Tran HT, Keen JD, Kricker M, Resnick MA, Gordenin DA 1997
Pirh2 E3 ubiquitin ligase monoubiquitinates DNA polymerase eta to suppress translesion DNA synthesis. Jung YS, Hakem A, Hakem R, Chen X 2011
Deoxynucleotide triphosphate binding mode conserved in Y family DNA polymerases. Johnson RE, Trincao J, Aggarwal AK, Prakash S, Prakash L 2003
Initiation of simian virus 40 DNA replication requires the interaction of a specific domain of human DNA polymerase alpha with large T antigen. Dornreiter I, Copeland WC, Wang TS 1993
Replication factor C recruits DNA polymerase delta to sites of nucleotide excision repair but is not required for PCNA recruitment. Overmeer RM, Gourdin AM, Giglia-Mari A, Kool H, Houtsmuller AB, Siegal G, Fousteri MI, Mullenders LH, Vermeulen W 2010
Human DNA polymerase eta is required for common fragile site stability during unperturbed DNA replication. Rey L, Sidorova JM, Puget N, Boudsocq F, Biard DS, Monnat RJ, Cazaux C, Hoffmann JS 2009
p53 Deficiency rescues neuronal apoptosis but not differentiation in DNA polymerase beta-deficient mice. Sugo N, Niimi N, Aratani Y, Takiguchi-Hayashi K, Koyama H 2004
Replication past O(6)-methylguanine by yeast and human DNA polymerase eta. Haracska L, Prakash S, Prakash L 2000
Nucleotide excision repair- and polymerase eta-mediated error-prone removal of mitomycin C interstrand cross-links. Zheng H, Wang X, Warren AJ, Legerski RJ, Nairn RS, Hamilton JW, Li L 2003
A mutational analysis of the yeast proliferating cell nuclear antigen indicates distinct roles in DNA replication and DNA repair. Ayyagari R, Impellizzeri KJ, Yoder BL, Gary SL, Burgers PM 1995
Inverted DNA repeats: a source of eukaryotic genomic instability. Gordenin DA, Lobachev KS, Degtyareva NP, Malkova AL, Perkins E, Resnick MA 1993
The 3'-->5' exonucleases of DNA polymerases delta and epsilon and the 5'-->3' exonuclease Exo1 have major roles in postreplication mutation avoidance in Saccharomyces cerevisiae. Tran HT, Gordenin DA, Resnick MA 1999
Effects of T antigen and replication protein A on the initiation of DNA synthesis by DNA polymerase alpha-primase. Collins KL, Kelly TJ 1991
DNA repair synthesis during base excision repair in vitro is catalyzed by DNA polymerase epsilon and is influenced by DNA polymerases alpha and delta in Saccharomyces cerevisiae. Wang Z, Wu X, Friedberg EC 1993
The mechanism of nucleotide incorporation by human DNA polymerase eta differs from that of the yeast enzyme. Washington MT, Johnson RE, Prakash L, Prakash S 2003
Role of hoogsteen edge hydrogen bonding at template purines in nucleotide incorporation by human DNA polymerase iota. Johnson RE, Haracska L, Prakash L, Prakash S 2006
Human DNA polymerase iota utilizes different nucleotide incorporation mechanisms dependent upon the template base. Washington MT, Johnson RE, Prakash L, Prakash S 2004
Complex formation of yeast Rev1 with DNA polymerase eta. Acharya N, Haracska L, Prakash S, Prakash L 2007
Yeast DNA polymerase zeta is an efficient extender of primer ends opposite from 7,8-dihydro-8-Oxoguanine and O6-methylguanine. Haracska L, Prakash S, Prakash L 2003
Meiosis in Coprinus: characterization and activities of two forms of DNA polymerase during meiotic stages. Sakaguchi K, Lu BC 1982
Efficient and error-free replication past a minor-groove N2-guanine adduct by the sequential action of yeast Rev1 and DNA polymerase zeta. Washington MT, Minko IG, Johnson RE, Haracska L, Harris TM, Lloyd RS, Prakash S, Prakash L 2004
Role of the p68 subunit of human DNA polymerase alpha-primase in simian virus 40 DNA replication. Ott RD, Rehfuess C, Podust VN, Clark JE, Fanning E 2002
The B-subunit of DNA polymerase alpha-primase associates with the origin recognition complex for initiation of DNA replication. Uchiyama M, Wang TS 2004
DNA polymerase delta is preferentially recruited during homologous recombination to promote heteroduplex DNA extension. Maloisel L, Fabre F, Gangloff S 2008
Noncompetitive counteractions of DNA polymerase epsilon and ISW2/yCHRAC for epigenetic inheritance of telomere position effect in Saccharomyces cerevisiae. Iida T, Araki H 2004
Association of DNA polymerase mu (pol mu) with Ku and ligase IV: role for pol mu in end-joining double-strand break repair. Mahajan KN, Nick McElhinny SA, Mitchell BS, Ramsden DA 2002
Increased rates of genomic deletions generated by mutations in the yeast gene encoding DNA polymerase delta or by decreases in the cellular levels of DNA polymerase delta. Kokoska RJ, Stefanovic L, DeMai J, Petes TD 2000
Destabilization of yeast micro- and minisatellite DNA sequences by mutations affecting a nuclease involved in Okazaki fragment processing (rad27) and DNA polymerase delta (pol3-t). Kokoska RJ, Stefanovic L, Tran HT, Resnick MA, Gordenin DA, Petes TD 1998
DNA polymerase I is required for premeiotic DNA replication and sporulation but not for X-ray repair in Saccharomyces cerevisiae. Budd ME, Wittrup KD, Bailey JE, Campbell JL 1989
Evidence that POB1, a Saccharomyces cerevisiae protein that binds to DNA polymerase alpha, acts in DNA metabolism in vivo. Miles J, Formosa T 1992
Molecular cloning of Drosophila mus308, a gene involved in DNA cross-link repair with homology to prokaryotic DNA polymerase I genes. Harris PV, Mazina OM, Leonhardt EA, Case RB, Boyd JB, Burtis KC 1996
Highly frequent frameshift DNA synthesis by human DNA polymerase mu. Zhang Y, Wu X, Yuan F, Xie Z, Wang Z 2001
Trf4 and Trf5 proteins of Saccharomyces cerevisiae exhibit poly(A) RNA polymerase activity but no DNA polymerase activity. Haracska L, Johnson RE, Prakash L, Prakash S 2005
The multiple biological roles of the 3'-->5' exonuclease of Saccharomyces cerevisiae DNA polymerase delta require switching between the polymerase and exonuclease domains. Jin YH, Garg P, Stith CM, Al-Refai H, Sterling JF, Murray LJ, Kunkel TA, Resnick MA, Burgers PM, Gordenin DA 2005
Schizosaccharomyces pombe cells lacking the amino-terminal catalytic domains of DNA polymerase epsilon are viable but require the DNA damage checkpoint control. Feng W, D'Urso G 2001
The function of DNA polymerase alpha at telomeric G tails is important for telomere homeostasis. Adams Martin A, Dionne I, Wellinger RJ, Holm C 2000
The Saccharomyces cerevisiae DNA polymerase alpha catalytic subunit interacts with Cdc68/Spt16 and with Pob3, a protein similar to an HMG1-like protein. Wittmeyer J, Formosa T 1997
Mutations in the ubiquitin binding UBZ motif of DNA polymerase eta do not impair its function in translesion synthesis during replication. Acharya N, Brahma A, Haracska L, Prakash L, Prakash S 2007
The polymerase eta translesion synthesis DNA polymerase acts independently of the mismatch repair system to limit mutagenesis caused by 7,8-dihydro-8-oxoguanine in yeast. Mudrak SV, Welz-Voegele C, Jinks-Robertson S 2009
Reduced levels of DNA polymerase delta induce chromosome fragile site instability in yeast. Lemoine FJ, Degtyareva NP, Kokoska RJ, Petes TD 2008
T-antigen-DNA polymerase alpha complex implicated in simian virus 40 DNA replication. Smale ST, Tjian R 1986
Mutations in yeast proliferating cell nuclear antigen define distinct sites for interaction with DNA polymerase delta and DNA polymerase epsilon. Eissenberg JC, Ayyagari R, Gomes XV, Burgers PM 1997
Cell cycle-specific expression and nuclear binding of DNA polymerase alpha. Stokke T, Erikstein B, Holte H, Funderud S, Steen HB 1991
Polymerization activity of an alpha-like DNA polymerase requires a conserved 3'-5' exonuclease active site. Gibbs JS, Weisshart K, Digard P, deBruynKops A, Knipe DM, Coen DM 1991
Requirement of Watson-Crick hydrogen bonding for DNA synthesis by yeast DNA polymerase eta. Washington MT, Helquist SA, Kool ET, Prakash L, Prakash S 2003
Analysis of damage tolerance pathways in Saccharomyces cerevisiae: a requirement for Rev3 DNA polymerase in translesion synthesis. Baynton K, Bresson-Roy A, Fuchs RP 1998
Rad18 regulates DNA polymerase kappa and is required for recovery from S-phase checkpoint-mediated arrest. Bi X, Barkley LR, Slater DM, Tateishi S, Yamaizumi M, Ohmori H, Vaziri C 2006
DNA polymerase POLN participates in cross-link repair and homologous recombination. Moldovan GL, Madhavan MV, Mirchandani KD, McCaffrey RM, Vinciguerra P, D'Andrea AD 2010
Acidic residues critical for the activity and biological function of yeast DNA polymerase eta. Kondratick CM, Washington MT, Prakash S, Prakash L 2001
Hydrocephalus, situs inversus, chronic sinusitis, and male infertility in DNA polymerase lambda-deficient mice: possible implication for the pathogenesis of immotile cilia syndrome. Kobayashi Y, Watanabe M, Okada Y, Sawa H, Takai H, Nakanishi M, Kawase Y, Suzuki H, Nagashima K, Ikeda K, Motoyama N 2002
Mutation at the polymerase active site of mouse DNA polymerase delta increases genomic instability and accelerates tumorigenesis. Venkatesan RN, Treuting PM, Fuller ED, Goldsby RE, Norwood TH, Gooley TA, Ladiges WC, Preston BD, Loeb LA 2007
Fidelity of two retroviral reverse transcriptases during DNA-dependent DNA synthesis in vitro. Roberts JD, Preston BD, Johnston LA, Soni A, Loeb LA, Kunkel TA 1989
Evidence for a Watson-Crick hydrogen bonding requirement in DNA synthesis by human DNA polymerase kappa. Wolfle WT, Washington MT, Kool ET, Spratt TE, Helquist SA, Prakash L, Prakash S 2005
Fidelity of DNA polymerase I and the DNA polymerase I-DNA primase complex from Saccharomyces cerevisiae. Kunkel TA, Hamatake RK, Motto-Fox J, Fitzgerald MP, Sugino A 1989
Preferential incorporation of G opposite template T by the low-fidelity human DNA polymerase iota. Zhang Y, Yuan F, Wu X, Wang Z 2000
The E295K DNA polymerase beta gastric cancer-associated variant interferes with base excision repair and induces cellular transformation. Lang T, Dalal S, Chikova AK, Dimaio D, Sweasy JB 2007
Requirement of DNA polymerase eta for error-free bypass of UV-induced CC and TC photoproducts. Yu SL, Johnson RE, Prakash S, Prakash L 2001
Cid1, a fission yeast protein required for S-M checkpoint control when DNA polymerase delta or epsilon is inactivated. Wang SW, Toda T, MacCallum R, Harris AL, Norbury C 2000
A coordinated temporal interplay of nucleosome reorganization factor, sister chromatin cohesion factor, and DNA polymerase alpha facilitates DNA replication. Zhou Y, Wang TS 2004
Saccharomyces cerevisiae DNA polymerase epsilon and polymerase sigma interact physically and functionally, suggesting a role for polymerase epsilon in sister chromatid cohesion. Edwards S, Li CM, Levy DL, Brown JA, Snow PM, Campbell JL 2003
Polymerase mu is a DNA-directed DNA/RNA polymerase. Nick McElhinny SA, Ramsden DA 2003
Physical and functional interactions of human DNA polymerase eta with PCNA. Haracska L, Johnson RE, Unk I, Phillips B, Hurwitz J, Prakash L, Prakash S 2001
Cell cycle-dependent regulation of human DNA polymerase alpha-primase activity by phosphorylation. Voitenleitner C, Rehfuess C, Hilmes M, O'Rear L, Liao PC, Gage DA, Ott R, Nasheuer HP, Fanning E 1999
Induction of beta-polymerase mRNA by DNA-damaging agents in Chinese hamster ovary cells. Fornace AJ, Zmudzka BZ, Hollander MC, Wilson SH 1989
DNA polymerase eta, the product of the xeroderma pigmentosum variant gene and a target of p53, modulates the DNA damage checkpoint and p53 activation. Liu G, Chen X 2006
DNA polymerases required for repair of UV-induced damage in Saccharomyces cerevisiae. Budd ME, Campbell JL 1995
A single domain in human DNA polymerase iota mediates interaction with PCNA: implications for translesion DNA synthesis. Haracska L, Acharya N, Unk I, Johnson RE, Hurwitz J, Prakash L, Prakash S 2005
Base composition of mononucleotide runs affects DNA polymerase slippage and removal of frameshift intermediates by mismatch repair in Saccharomyces cerevisiae. Gragg H, Harfe BD, Jinks-Robertson S 2002
The accessory subunit of Xenopus laevis mitochondrial DNA polymerase gamma increases processivity of the catalytic subunit of human DNA polymerase gamma and is related to class II aminoacyl-tRNA synthetases. Carrodeguas JA, Kobayashi R, Lim SE, Copeland WC, Bogenhagen DF 1999
Mammalian DNA polymerase auxiliary proteins: analysis of replication factor C-catalyzed proliferating cell nuclear antigen loading onto circular double-stranded DNA. Podust LM, Podust VN, Sogo JM, Hübscher U 1995
Pirh2 E3 ubiquitin ligase targets DNA polymerase eta for 20S proteasomal degradation. Jung YS, Liu G, Chen X 2010
Mechanism of efficient and accurate nucleotide incorporation opposite 7,8-dihydro-8-oxoguanine by Saccharomyces cerevisiae DNA polymerase eta. Carlson KD, Washington MT 2005
The second-largest subunit of the mouse DNA polymerase alpha-primase complex facilitates both production and nuclear translocation of the catalytic subunit of DNA polymerase alpha. Mizuno T, Ito N, Yokoi M, Kobayashi A, Tamai K, Miyazawa H, Hanaoka F 1998
Molecular architecture of the mouse DNA polymerase alpha-primase complex. Mizuno T, Yamagishi K, Miyazawa H, Hanaoka F 1999
Complex formation of yeast Rev1 and Rev7 proteins: a novel role for the polymerase-associated domain. Acharya N, Haracska L, Johnson RE, Unk I, Prakash S, Prakash L 2005
Stimulation of DNA synthesis activity of human DNA polymerase kappa by PCNA. Haracska L, Unk I, Johnson RE, Phillips BB, Hurwitz J, Prakash L, Prakash S 2002
A role for DNA polymerase mu in the emerging DJH rearrangements of the postgastrulation mouse embryo. Gozalbo-López B, Andrade P, Terrados G, de Andrés B, Serrano N, Cortegano I, Palacios B, Bernad A, Blanco L, Marcos MA, Gaspar ML 2009
Incubation at the nonpermissive temperature induces deficiencies in UV resistance and mutagenesis in mouse mutant cells expressing a temperature-sensitive ubiquitin-activating enzyme (E1). Ikehata H, Kaneda S, Yamao F, Seno T, Ono T, Hanaoka F 1997
Role of DNA polymerase zeta in the bypass of a (6-4) TT photoproduct. Johnson RE, Haracska L, Prakash S, Prakash L 2001
Alterations of DNA and chromatin structures at telomeres and genetic instability in mouse cells defective in DNA polymerase alpha. Nakamura M, Nabetani A, Mizuno T, Hanaoka F, Ishikawa F 2005
Efficient and error-free replication past a minor-groove DNA adduct by the sequential action of human DNA polymerases iota and kappa. Washington MT, Minko IG, Johnson RE, Wolfle WT, Harris TM, Lloyd RS, Prakash S, Prakash L 2004
The human stress-activated protein kin17 belongs to the multiprotein DNA replication complex and associates in vivo with mammalian replication origins. Miccoli L, Frouin I, Novac O, Di Paola D, Harper F, Zannis-Hadjopoulos M, Maga G, Biard DS, Angulo JF 2005
Palm mutants in DNA polymerases alpha and eta alter DNA replication fidelity and translesion activity. Niimi A, Limsirichaikul S, Yoshida S, Iwai S, Masutani C, Hanaoka F, Kool ET, Nishiyama Y, Suzuki M 2004
Complex formation with Rev1 enhances the proficiency of Saccharomyces cerevisiae DNA polymerase zeta for mismatch extension and for extension opposite from DNA lesions. Acharya N, Johnson RE, Prakash S, Prakash L 2006
Replication past a trans-4-hydroxynonenal minor-groove adduct by the sequential action of human DNA polymerases iota and kappa. Wolfle WT, Johnson RE, Minko IG, Lloyd RS, Prakash S, Prakash L 2006
Requirement of RAD5 and MMS2 for postreplication repair of UV-damaged DNA in Saccharomyces cerevisiae. Torres-Ramos CA, Prakash S, Prakash L 2002
Induction of mutation in mouse FM3A cells by N4-aminocytidine-mediated replicational errors. Takahashi M, Nishizawa M, Negishi K, Hanaoka F, Yamada MA, Hayatsu H 1988
Nucleosome Disruption by DNA Ligase III-XRCC1 Promotes Efficient Base Excision Repair. Odell ID, Barbour JE, Murphy DL, Della Maria JA, Sweasy JB, Tomkinson AE, Wallace SS, Pederson DS 2011
Specification of regions of DNA replication initiation during embryogenesis in the 65-kilobase DNApolalpha-dE2F locus of Drosophila melanogaster. Sasaki T, Sawado T, Yamaguchi M, Shinomiya T 1999
Murine DNA polymerase beta gene: mapping of transcription initiation sites and the nucleotide sequence of the putative promoter region. Yamaguchi M, Hirose F, Hayashi Y, Nishimoto Y, Matsukage A 1987
Initiation of simian virus 40 DNA replication in vitro: aphidicolin causes accumulation of early-replicating intermediates and allows determination of the initial direction of DNA synthesis. Decker RS, Yamaguchi M, Possenti R, DePamphilis ML 1986
Targeted expression of the DNA binding domain of DRE-binding factor, a Drosophila transcription factor, attenuates DNA replication of the salivary gland and eye imaginal disc. Hirose F, Yamaguchi M, Matsukage A 1999

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