The Journal of biological chemistry

(J Biol Chem) ISSNs: , 1083-351X

References in The Journal of biological chemistry:

Title Authors Year
Nuclease activity in a fragment of bacteriophage T4 deoxyribonucleic acid polymerase induced by the amber mutant am B22. Nossal NG, Hershfield MS 1971
The structure of a high fidelity DNA polymerase bound to a mismatched nucleotide reveals an ajar intermediate conformation in the nucleotide selection mechanism Wu E, Beese L 2011
Hydrolysis of template and newly synthesized deoxyribonucleic acid by the 3' to 5' exonuclease activity of the T4 deoxyribonucleic acid polymerase. Hershfield MS, Nossal NG 1972
RNA primer handoff in bacteriophage T4 DNA replication: the role of single-stranded DNA-binding protein and polymerase accessory proteins. Nelson SW, Kumar R, Benkovic SJ 2008
Comparative kinetics of nucleotide analog incorporation by vent DNA polymerase. Gardner AF, Joyce CM, Jack WE 2004
Bypass of a nick by the replisome of bacteriophage T7. Zhu B, Lee SJ, Richardson CC 2011
On the exonuclease activity of phage T4 deoxyribonucleic acid polymerase. Huang WM, Lehman IR 1972
Functional analysis of HIV-1 reverse transcriptase amino acids involved in resistance to multiple nonnucleoside inhibitors. Sardana VV, Emini EA, Gotlib L, Graham DJ, Lineberger DW, Long WJ, Schlabach AJ, Wolfgang JA, Condra JH 1992
Characterization of a DNA polymerase from the hyperthermophile archaea Thermococcus litoralis. Vent DNA polymerase, steady state kinetics, thermal stability, processivity, strand displacement, and exonuclease activities. Kong H, Kucera RB, Jack WE 1993
Purification and properties of wild-type and exonuclease-deficient DNA polymerase II from Escherichia coli. Cai H, Yu H, McEntee K, Kunkel TA, Goodman MF 1995
Homology between mammalian DNA polymerase beta and terminal deoxynucleotidyltransferase. Matsukage A, Nishikawa K, Ooi T, Seto Y, Yamaguchi M 1987
Immunological comparison of purified DNA polymerase alpha from embryos of Drosophila melanogaster with forms of the enzyme present in vivo. Sauer B, Lehman IR 1982
Effect of phosphorothioate homo-oligodeoxynucleotides on herpes simplex virus type 2-induced DNA polymerase. Gao WY, Stein CA, Cohen JS, Dutschman GE, Cheng YC 1989
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Reactions at the polymerase active site that contribute to the fidelity of Escherichia coli DNA polymerase I (Klenow fragment). Joyce CM, Sun XC, Grindley ND 1992
Biochemical properties of Saccharomyces cerevisiae DNA polymerase IV. Bebenek K, Garcia-Diaz M, Patishall SR, Kunkel TA 2005
Thioredoxin reductase-dependent insulin disulfide reduction by phage T7 DNA polymerase reflects dissociation of the enzyme into subunits. Slaby I, Holmgren A 1989
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Specificity of DNA lesion bypass by the yeast DNA polymerase eta. Yuan F, Zhang Y, Rajpal DK, Wu X, Guo D, Wang M, Taylor JS, Wang Z 2000
Catalytic subunit of mitochondrial DNA polymerase from Drosophila embryos. Cloning, bacterial overexpression, and biochemical characterization. Lewis DL, Farr CL, Wang Y, Lagina AT, Kaguni LS 1996
Replication of the simian virus 40 chromosome with purified proteins. Ishimi Y, Sugasawa K, Hanaoka F, Kikuchi A 1991
Human DNA polymerase epsilon colocalizes with proliferating cell nuclear antigen and DNA replication late, but not early, in S phase. Fuss J, Linn S 2002
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Coordination between the polymerase and 5'-nuclease components of DNA polymerase I of Escherichia coli. Xu Y, Grindley ND, Joyce CM 2000
Monoclonal antibodies specific for the alpha subunit of the Escherichia coli DNA polymerase III holoenzyme. Wu YH, Franden MA, Hawker JR, McHenry CS 1984
Translesion synthesis of abasic sites by yeast DNA polymerase epsilon. Sabouri N, Johansson E 2009
Reduced stimulation of recombinant Pol {gamma} and mtDNA helicase by variants of mitochondrial single-stranded DNA-binding protein (mtSSB) correlates with defects in mtDNA Replication in animal cells. Oliveira MT, Kaguni LS 2011
Synthesis of DNA by DNA polymerase epsilon in vitro. Lee SH, Pan ZQ, Kwong AD, Burgers PM, Hurwitz J 1991
Association of DNA primase with the beta/gamma subunits of DNA polymerase alpha from Drosophila melanogaster embryos. Kaguni LS, Rossignol JM, Conaway RC, Banks GR, Lehman IR 1983
Initiation of DNA replication by simian virus 40 T antigen is inhibited by the p107 protein. Amin AA, Murakami Y, Hurwitz J 1994
Deoxyribonucleic acid polymerase of bacteriophage T7. Purification and properties of the phage-encoded subunit, the gene 5 protein. Hori K, Mark DF, Richardson CC 1979
Enzymatic synthesis of deoxyribonucleic acid. 36. A proofreading function for the 3' leads to 5' exonuclease activity in deoxyribonucleic acid polymerases. Brutlag D, Kornberg A 1972
Nuclear DNA polymerases and the HeLa cell cycle. Chiu RW, Baril EF 1975
Mode analysis of a fatty acid molecule binding to the N-terminal 8-kDa domain of DNA polymerase beta. A 1:1 complex and binding surface. Mizushina Y, Ohkubo T, Date T, Yamaguchi T, Saneyoshi M, Sugawara F, Sakaguchi K 1999
Role of a GAG hinge in the nucleotide-induced conformational change governing nucleotide specificity by T7 DNA polymerase. Jin Z, Johnson KA 2011
The interaction of DNA polymerase III and the product of the Escherichia coli mutator gene, mutD. DiFrancesco R, Bhatnagar SK, Brown A, Bessman MJ 1984
Kinetic interaction of human immunodeficiency virus type 1 reverse transcriptase with the antiviral tetrahydroimidazo[4,5,1-jk]-[1,4]-benzodiazepine-2-(1H)-thione compound, R82150. Frank KB, Noll GJ, Connell EV, Sim IS 1991
Kinetic analysis of Escherichia coli deoxyribonucleic acid polymerase I. Travaglini EC, Mildvan AS, Loeb LA 1975
Purification of a DNA primase activity from the yeast Saccharomyces cerevisiae. Primase can be separated from DNA polymerase I. Wilson FE, Sugino A 1985
Fidelity and processivity of DNA synthesis by DNA polymerase kappa, the product of the human DINB1 gene. Ohashi E, Bebenek K, Matsuda T, Feaver WJ, Gerlach VL, Friedberg EC, Ohmori H, Kunkel TA 2000
Drosophila DNA polymerase zeta interacts with recombination repair protein 1, the Drosophila homologue of human abasic endonuclease 1. Takeuchi R, Ruike T, Nakamura R, Shimanouchi K, Kanai Y, Abe Y, Ihara A, Sakaguchi K 2006
DNA damage control by novel DNA polymerases: translesion replication and mutagenesis. Livneh Z 2001
The Y181C substitution in 3'-azido-3'-deoxythymidine-resistant human immunodeficiency virus, type 1, reverse transcriptase suppresses the ATP-mediated repair of the 3'-azido-3'-deoxythymidine 5'-monophosphate-terminated primer. Selmi B, Deval J, Alvarez K, Boretto J, Sarfati S, Guerreiro C, Canard B 2003
Yeast Rev1 protein is a G template-specific DNA polymerase. Haracska L, Prakash S, Prakash L 2002
Human immunodeficiency virus reverse transcriptase. Substrate and inhibitor kinetics with thymidine 5'-triphosphate and 3'-azido-3'-deoxythymidine 5'-triphosphate. Reardon JE, Miller WH 1990
Localization of the active site of HIV-1 reverse transcriptase-associated RNase H domain on a DNA template using site-specific generated hydroxyl radicals. Götte M, Maier G, Gross HJ, Heumann H 1998
A loss of viral replicative capacity correlates with altered DNA polymerization kinetics by the human immunodeficiency virus reverse transcriptase bearing the K65R and L74V dideoxynucleoside resistance substitutions. Deval J, Navarro JM, Selmi B, Courcambeck J, Boretto J, Halfon P, Garrido-Urbani S, Sire J, Canard B 2004
Mutational analysis of Tyr-501 of HIV-1 reverse transcriptase. Effects on ribonuclease H activity and inhibition of this activity by N-acylhydrazones. Arion D, Sluis-Cremer N, Min KL, Abram ME, Fletcher RS, Parniak MA 2002
Discovery of DNA polymerase. Lehman IR 2003
Real-time kinetics of the interaction between the two subunits, Escherichia coli thioredoxin and gene 5 protein of phage T7 DNA polymerase. Singha NC, Vlamis-Gardikas A, Holmgren A 2003
An antimutator deoxyribonucleic acid polymerase. I. Purification and properties of the enzyme. Lo KY, Bessman MJ 1976
Characterization of herpes simplex virus-induced deoxyribonucleic acid polymerase. Weissbach A, Hong SC, Aucker J, Muller R 1973
Mechanism of T5-induced DNA polymerase. I. Replication of short primer templates. Das SK, Fujimura RK 1977
Temporal coordination between initiation of HIV (+)-strand DNA synthesis and primer removal. Götte M, Maier G, Onori AM, Cellai L, Wainberg MA, Heumann H 1999
Kinetic mechanism of the DNA-dependent DNA polymerase activity of human immunodeficiency virus reverse transcriptase. Hsieh JC, Zinnen S, Modrich P 1993
Species specificity of simian virus 40 DNA replication in vitro requires multiple functions of human DNA polymerase alpha. Smith RW, Steffen C, Grosse F, Nasheuer HP 2002
Purification and characterization of pol kappa, a DNA polymerase encoded by the human DINB1 gene. Gerlach VL, Feaver WJ, Fischhaber PL, Friedberg EC 2001
Interacting fidelity defects in the replicative DNA polymerase of bacteriophage RB69. Bebenek A, Dressman HK, Carver GT, Ng S, Petrov VM, Yang G, Konigsberg WH, Karam JD, Drake JW 2001
O-helix mutant T664P of Thermus aquaticus DNA polymerase I: altered catalytic properties for incorporation of incorrect nucleotides but not correct nucleotides. Tosaka A, Ogawa M, Yoshida S, Suzuki M 2001
The fidelity of human DNA polymerase gamma with and without exonucleolytic proofreading and the p55 accessory subunit. Longley MJ, Nguyen D, Kunkel TA, Copeland WC 2001
Mediation of proliferating cell nuclear antigen (PCNA)-dependent DNA replication through a conserved p21(Cip1)-like PCNA-binding motif present in the third subunit of human DNA polymerase delta. Ducoux M, Urbach S, Baldacci G, Hübscher U, Koundrioukoff S, Christensen J, Hughes P 2001
Fidelity of DNA polymerases isolated from regenerating liver chromatin of aging Mus musculus. Silber JR, Fry M, Martin GM, Loeb LA 1985
A model for Escherichia coli DNA polymerase III holoenzyme assembly at primer/template ends. DNA triggers a change in binding specificity of the gamma complex clamp loader. Ason B, Bertram JG, Hingorani MM, Beechem JM, O'Donnell ME, Goodman MF, Bloom LB 2000
Photoaffinity labeling of DNA template-primer binding site in Escherichia coli DNA polymerase I. Identification of involved amino acids. Pandey VN, Kaushik N, Modak MJ 1994
The putative coiled coil domain of the phi 29 terminal protein is a major determinant involved in recognition of the origin of replication. Serna-Rico A, Illana B, Salas M, Meijer WJ 2000
Ferrate oxidation of Escherichia coli DNA polymerase-I. Identification of a methionine residue that is essential for DNA binding. Basu A, Williams KR, Modak MJ 1987
The Werner syndrome protein stimulates DNA polymerase beta strand displacement synthesis via its helicase activity. Harrigan JA, Opresko PL, von Kobbe C, Kedar PS, Prasad R, Wilson SH, Bohr VA 2003
Replication bypass of interstrand cross-link intermediates by Escherichia coli DNA polymerase IV. Kumari A, Minko IG, Harbut MB, Finkel SE, Goodman MF, Lloyd RS 2008
5-Phosphoribosyl 1-pyrophosphate synthetase converts the acyclic nucleoside phosphonates 9-(3-hydroxy-2-phosphonylmethoxypropyl)adenine and 9-(2-phosphonylmethoxyethyl)adenine directly to their antivirally active diphosphate derivatives. Balzarini J, De Clercq E 1991
The base substitution fidelity of eucaryotic DNA polymerases. Mispairing frequencies, site preferences, insertion preferences, and base substitution by dislocation. Kunkel TA, Alexander PS 1986
Structural and enzymatic studies of the T4 DNA replication system. II. ATPase properties of the polymerase accessory protein complex. Jarvis TC, Paul LS, Hockensmith JW, von Hippel PH 1989
Gap-filling DNA synthesis by HeLa DNA polymerase alpha in an in vitro base excision DNA repair scheme. Mosbaugh DW, Linn S 1984
Analysis of a T4 DNA replication protein complex. Studies of the DNA recognition site for T4 gene 44/62 and 45 protein-catalyzed ATP hydrolysis. Piperno JR, Kallen RG, Alberta BM 1978
Tight association of DNA primase with a subspecies of mouse DNA polymerase alpha. Yagura T, Tanaka S, Kozu T, Seno T, Korn D 1983
The discovery of RNA polymerase. Hurwitz J 2005
Immunological relationships between chick embryo polymerases. Brun GM, Assairi LM, Chapeville F 1975
Photoaffinity labeling of the Klenow fragment with 8-azido-dATP. Rush J, Konigsberg WH 1990
Purification of gene 41 protein of bacteriophage T4. Morris CF, Moran LA, Alberts BM 1979
Biochemical characterization of interactions between DNA polymerase and single-stranded DNA-binding protein in bacteriophage RB69. Sun S, Shamoo Y 2003
Lesion bypass of N2-ethylguanine by human DNA polymerase iota. Pence MG, Blans P, Zink CN, Hollis T, Fishbein JC, Perrino FW 2009
The bacteriophage phi 29 DNA polymerase, a proofreading enzyme. Garmendia C, Bernad A, Esteban JA, Blanco L, Salas M 1992
Characterization of strand displacement synthesis catalyzed by bacteriophage T7 DNA polymerase. Lechner RL, Engler MJ, Richardson CC 1983
Structure/function studies of human immunodeficiency virus type 1 reverse transcriptase. Alanine scanning mutagenesis of an alpha-helix in the thumb subdomain. Beard WA, Stahl SJ, Kim HR, Bebenek K, Kumar A, Strub MP, Becerra SP, Kunkel TA, Wilson SH 1994
Studies on the biochemical basis of spontaneous mutation. I. A comparison of the deoxyribonucleic acid polymerases of mutator, antimutator, and wild type strains of bacteriophage T4. Muzyczka N, Poland RL, Bessman MJ 1972
Sloppy bypass of an abasic lesion catalyzed by a Y-family DNA polymerase. Fiala KA, Suo Z 2007
Characterization and mapping of the pyrophosphorolytic activity of the phage phi 29 DNA polymerase. Involvement of amino acid motifs highly conserved in alpha-like DNA polymerases. Blasco MA, Bernad A, Blanco L, Salas M 1991
Characterization of a large form of DNA polymerase delta from HeLa cells that is insensitive to proliferating cell nuclear antigen. Syvaoja J, Linn S 1989
Flexibility of eukaryotic Okazaki fragment maturation through regulated strand displacement synthesis. Stith CM, Sterling JF, Resnick MA, Gordenin DA, Burgers PM 2008
Polymerase dynamics at the eukaryotic DNA replication fork. Burgers PM 2009
Influence of neighboring bases on DNA polymerase insertion and proofreading fidelity. Petruska J, Goodman MF 1985
trans-Lesion synthesis past bulky benzo[a]pyrene diol epoxide N2-dG and N6-dA lesions catalyzed by DNA bypass polymerases. Rechkoblit O, Zhang Y, Guo D, Wang Z, Amin S, Krzeminsky J, Louneva N, Geacintov NE 2002
Inefficient bypass of an abasic site by DNA polymerase eta. Haracska L, Washington MT, Prakash S, Prakash L 2001
Interactions of Escherichia coli thioredoxin, the processivity factor, with bacteriophage T7 DNA polymerase and helicase. Ghosh S, Hamdan SM, Cook TE, Richardson CC 2008
Effect of reaction pH on the fidelity and processivity of exonuclease-deficient Klenow polymerase. Eckert KA, Kunkel TA 1993
Alterations in the phosphorylation and activity of DNA polymerase alpha correlate with the change in replicative DNA synthesis as quiescent cells re-enter the cell cycle. Cripps-Wolfman J, Henshaw EC, Bambara RA 1989
Saccharomyces cerevisiae replication factor C. II. Formation and activity of complexes with the proliferating cell nuclear antigen and with DNA polymerases delta and epsilon. Burgers PM 1991
On the fidelity of DNA replication. Specificity of nucleotide substitution by intercalating agents. Shearman CW, Loeb LA 1983
An ATP stimulation of T4 DNA polymerase mediated via T4 gene 44/62 and 45 proteins. The requirement for ATP hydrolysis. Piperno JR, Alberts BM 1978
DNA polymerase beta substrate specificity: side chain modulation of the "A-rule". Beard WA, Shock DD, Batra VK, Pedersen LC, Wilson SH 2009
Fidelity and processivity of Saccharomyces cerevisiae DNA polymerase eta. Washington MT, Johnson RE, Prakash S, Prakash L 1999
Lagging strand DNA synthesis at the eukaryotic replication fork involves binding and stimulation of FEN-1 by proliferating cell nuclear antigen. Li X, Li J, Harrington J, Lieber MR, Burgers PM 1995
Versatility of Y-family Sulfolobus solfataricus DNA polymerase Dpo4 in translesion synthesis past bulky N2-alkylguanine adducts. Zhang H, Eoff RL, Kozekov ID, Rizzo CJ, Egli M, Guengerich FP 2009
Interaction of mutant thioredoxins of Escherichia coli with the gene 5 protein of phage T7. The redox capacity of thioredoxin is not required for stimulation of DNA polymerase activity. Huber HE, Russel M, Model P, Richardson CC 1986
Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7. Tabor S, Huber HE, Richardson CC 1987
A simple and rapid purification method for Escherichia coli DNA polymerase I. Rhodes G, Jentsch KD, Jovin TM 1979
Structure of DNA polymerase delta from Saccharomyces cerevisiae. Johansson E, Majka J, Burgers PM 2001
Side chains involved in catalysis of the polymerase reaction of DNA polymerase I from Escherichia coli. Polesky AH, Dahlberg ME, Benkovic SJ, Grindley ND, Joyce CM 1992
In vivo functional analysis of the human mitochondrial DNA polymerase POLG expressed in cultured human cells. Spelbrink JN, Toivonen JM, Hakkaart GA, Kurkela JM, Cooper HM, Lehtinen SK, Lecrenier N, Back JW, Speijer D, Foury F, Jacobs HT 2000
Low fidelity mutants in the O-helix of Thermus aquaticus DNA polymerase I. Suzuki M, Avicola AK, Hood L, Loeb LA 1997
Baculovirus expression reconstitutes Drosophila mitochondrial DNA polymerase. Wang Y, Kaguni LS 1999
A novel DNA damage response: rapid degradation of the p12 subunit of dna polymerase delta. Zhang S, Zhou Y, Trusa S, Meng X, Lee EY, Lee MY 2007
Enzymatic synthesis of deoxyribonucleic acid. XIII. Kinetics of primed and de novo synthesis of deoxynucleotide polymers. RADDING CM, Kornberg A 1962
Base miscoding and strand misalignment errors by mutator Klenow polymerases with amino acid substitutions at tyrosine 766 in the O helix of the fingers subdomain. Bell JB, Eckert KA, Joyce CM, Kunkel TA 1997
Fidelity studies of the human DNA polymerase alpha. The most conserved region among alpha-like DNA polymerases is responsible for metal-induced infidelity in DNA synthesis. Copeland WC, Lam NK, Wang TS 1993
Structural basis for novel interactions between human translesion synthesis polymerases and proliferating cell nuclear antigen. Hishiki A, Hashimoto H, Hanafusa T, Kamei K, Ohashi E, Shimizu T, Ohmori H, Sato M 2009
Oxygen free radical damage to DNA. Translesion synthesis by human DNA polymerase eta and resistance to exonuclease action at cyclopurine deoxynucleoside residues. Kuraoka I, Robins P, Masutani C, Hanaoka F, Gasparutto D, Cadet J, Wood RD, Lindahl T 2001
A rapid procedure for isolation of large quantities of Escherichia coli DNA polymerase I utilizing a lambdapolA transducing phage. Kelley WS, Stump KH 1979
Translesional DNA synthesis through a C8-guanyl adduct of 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP) in Vitro: REV1 inserts dC opposite the lesion, and DNA polymerase kappa potentially catalyzes extension reaction from the 3'-dC terminus. Fukuda H, Takamura-Enya T, Masuda Y, Nohmi T, Seki C, Kamiya K, Sugimura T, Masutani C, Hanaoka F, Nakagama H 2009
Interaction of Drosophila DNA polymerase alpha holoenzyme with synthetic template-primers containing mismatched primer bases or propanodeoxyguanosine adducts at various positions in template and primer regions. Weiss SJ, Fisher PA 1992
Excision of C-4'-oxidized deoxyribose lesions from double-stranded DNA by human apurinic/apyrimidinic endonuclease (Ape1 protein) and DNA polymerase beta. Xu YJ, Kim EY, Demple B 1998
Chick embryo DNA polymerase alpha. Polypeptide components and their microheterogeneity. Yamaguchi M, Tanabe K, Takahashi T, Matsukage A 1982
Functional interaction between the herpes simplex-1 DNA polymerase and UL42 protein. Hernandez TR, Lehman IR 1990
Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. III. The Gp43 DNA polymerase binds to the same face of the sliding clamp as the clamp loader. Latham GJ, Bacheller DJ, Pietroni P, von Hippel PH 1997
Herpes simplex virus type 1 DNA polymerase. Mutational analysis of the 3'-5'-exonuclease domain. Kühn FJ, Knopf CW 1996
DnaX complex of Escherichia coli DNA polymerase III holoenzyme. Physical characterization of the DnaX subunits and complexes. Dallmann HG, McHenry CS 1995
Observing translesion synthesis of an aromatic amine DNA adduct by a high-fidelity DNA polymerase. Hsu GW, Kiefer JR, Burnouf DY, Becherel OJ, Fuchs RP, Beese LS 2004
Catalytic subunit of human DNA polymerase alpha overproduced from baculovirus-infected insect cells. Structural and enzymological characterization. Copeland WC, Wang TS 1991
C-terminal phenylalanine of bacteriophage T7 single-stranded DNA-binding protein is essential for strand displacement synthesis by T7 DNA polymerase at a nick in DNA. Ghosh S, Marintcheva B, Takahashi M, Richardson CC 2009
The fidelity of DNA synthesis catalyzed by derivatives of Escherichia coli DNA polymerase I. Bebenek K, Joyce CM, Fitzgerald MP, Kunkel TA 1990
The interaction between DNA polymerase lambda and anticancer nucleoside analogs. Garcia-Diaz M, Murray MS, Kunkel TA, Chou KM 2010
Role for DNA polymerase kappa in the processing of N2-N2-guanine interstrand cross-links. Minko IG, Harbut MB, Kozekov ID, Kozekova A, Jakobs PM, Olson SB, Moses RE, Harris TM, Rizzo CJ, Lloyd RS 2008
Exploring the effects of active site constraints on HIV-1 reverse transcriptase DNA polymerase fidelity. Cramer J, Strerath M, Marx A, Restle T 2002
In vivo mutagenesis by Escherichia coli DNA polymerase I. Ile(709) in motif A functions in base selection. Shinkai A, Loeb LA 2001
Characterization of the action of Escherichia coli DNA polymerase I at incisions produced by repair endodeoxyribonucleases. Mosbaugh DW, Linn S 1982
A study of the mechanism of DNA polymerase I from Escherichia coli with diastereomeric phosphorothioate analogs of deoxyadenosine triphosphate. Burgers PM, Eckstein F 1979
Site-specific footprinting reveals differences in the translocation status of HIV-1 reverse transcriptase. Implications for polymerase translocation and drug resistance. Marchand B, Götte M 2003
Connection domain mutations N348I and A360V in HIV-1 reverse transcriptase enhance resistance to 3'-azido-3'-deoxythymidine through both RNase H-dependent and -independent mechanisms. Ehteshami M, Beilhartz GL, Scarth BJ, Tchesnokov EP, McCormick S, Wynhoven B, Harrigan PR, Götte M 2008
Mutations M184V and Y115F in HIV-1 reverse transcriptase discriminate against "nucleotide-competing reverse transcriptase inhibitors". Ehteshami M, Scarth BJ, Tchesnokov EP, Dash C, Le Grice SF, Hallenberger S, Jochmans D, Götte M 2008
Contributions of nucleotide excision repair, DNA polymerase eta, and homologous recombination to replication of UV-irradiated herpes simplex virus type 1. Muylaert I, Elias P 2010
Active site mutations in mammalian DNA polymerase delta alter accuracy and replication fork progression. Schmitt MW, Venkatesan RN, Pillaire MJ, Hoffmann JS, Sidorova JM, Loeb LA 2010
Structural basis for the role of the K65R mutation in HIV-1 reverse transcriptase polymerization, excision antagonism, and tenofovir resistance. Das K, Bandwar RP, White KL, Feng JY, Sarafianos SG, Tuske S, Tu X, Clark AD, Boyer PL, Hou X, Gaffney BL, Jones RA, Miller MD, Hughes SH, Arnold E 2009
Requirement of DNA polymerase activity of yeast Rad30 protein for its biological function. Johnson RE, Prakash S, Prakash L 1999
Association of diadenosine 5',5"'-P1,P4-tetraphosphate binding protein with HeLa cell DNA polymerase alpha. Rapaport E, Zamecnik PC, Baril EF 1981
Serological analysis of human deoxyribonucleic acid polymerases. Preparation and properties of antiserum to deoxyribonucleic acid polymerase I from human lymphoid cells. Smith RG, Abrell JW, Lewis BJ, Gallo RC 1975
A dynamic polymerase exchange with Escherichia coli DNA polymerase IV replacing DNA polymerase III on the sliding clamp. Furukohri A, Goodman MF, Maki H 2008
Synthetic template specificity of a deoxyribonucleic acid polymerase from regenerating rat liver. de Recondo AM, Lepesant JA, Fichot O, Grasset L, Rossignol JM, Cazillis M 1973
Escherichia coli thioredoxin stabilizes complexes of bacteriophage T7 DNA polymerase and primed templates. Huber HE, Tabor S, Richardson CC 1987
Vaccinia virus uracil DNA glycosylase interacts with the A20 protein to form a heterodimeric processivity factor for the viral DNA polymerase. Stanitsa ES, Arps L, Traktman P 2006
The dissimilitude of the low and high molecular weight deoxyribonucleic acid-dependent deoxyribonucleic acid polymerases of HeLa cells. Spadari S, Muller R, Weissbach A 1974
Human DNA polymerase lambda functionally and physically interacts with proliferating cell nuclear antigen in normal and translesion DNA synthesis. Maga G, Villani G, Ramadan K, Shevelev IV, Tanguy Le Gac N, Blanco L, Blanca G, Spadari S, Hübscher U 2002
Two modes of interaction of the single-stranded DNA-binding protein of bacteriophage T7 with the DNA polymerase-thioredoxin complex. Ghosh S, Hamdan SM, Richardson CC 2010
Gene 4 protein of bacteriophage T7. Purification physical properties, and stimulation of T7 DNA polymerase during the elongation of polynucleotide chains. Kolodner R, Masamune Y, LeClerc JE, Richardson CC 1978
Escherichia coli DNA polymerase I. Construction of a polA plasmid for amplification and an improved purification scheme. Minkley EG, Leney AT, Bodner JB, Panicker MM, Brown WE 1984
Protein-protein interactions between adenovirus DNA polymerase and nuclear factor I mediate formation of the DNA replication preinitiation complex. Chen M, Mermod N, Horwitz MS 1990
A novel single-stranded DNA-binding protein from the Novikoff hepatoma which stimulates DNA polymerase beta. Purification and general characterization. Koerner TJ, Meyer RR 1983
Studies on the mechanism of Escherichia coli DNA polymerase I large fragment. Chain termination and modulation by polynucleotides. Detera SD, Wilson SH 1982
Genetic and biochemical studies of bacteriophage T4 DNA polymerase 3'-->5'-exonuclease activity. Reha-Krantz LJ, Nonay RL 1993
Mechanism of primer-template-dependent conversion of dNTP leads to dNMP by T5 DNA polymerase. Das SK, Fujimura RK 1980
Chick embryo DNA polymerase gamma. Purification and structural analysis of nearly homogeneous enzyme. Yamaguchi M, Matsukage A, Takahashi T 1980
Oxygen-dependent cleavage of DNA by the 1,10-phenanthroline . cuprous complex. Inhibition of Escherichia coli DNA polymerase I. Sigman DS, Graham DR, D'Aurora V, Stern AM 1979
Enzymological characterization of KB cell DNA polymerase-alpha. II. Specificity of the protein-nucleic acid interaction. Fisher PA, Korn D 1979
A high molecular weight DNA polymerase from Drosophila melanogaster embryos. Purification, structure, and partial characterization. Banks GR, Boezi JA, Lehman IR 1979
DNA polymerase III of Escherichia coli. Purification and identification of subunits. McHenry CS, Crow W 1979
Crystal structure of human REV7 in complex with a human REV3 fragment and structural implication of the interaction between DNA polymerase zeta and REV1. Hara K, Hashimoto H, Murakumo Y, Kobayashi S, Kogame T, Unzai S, Akashi S, Takeda S, Shimizu T, Sato M 2010
Long patch base excision repair with purified human proteins. DNA ligase I as patch size mediator for DNA polymerases delta and epsilon. Pascucci B, Stucki M, Jónsson ZO, Dogliotti E, Hübscher U 1999
Characterization of the Bacillus subtilis bacteriophage PBS2-induced DNA polymerase and its associated exonuclease activity. Hitzeman RA, Price AR 1978
POLN, a nuclear PolA family DNA polymerase homologous to the DNA cross-link sensitivity protein Mus308. Marini F, Kim N, Schuffert A, Wood RD 2003
Human immunodeficiency virus type-1 reverse transcriptase. Contribution of Met-184 to binding of nucleoside 5'-triphosphate. Wilson JE, Aulabaugh A, Caligan B, McPherson S, Wakefield JK, Jablonski S, Morrow CD, Reardon JE, Furman PA 1996
Purification and characterization of a deoxyribonucleic acid polymerase from rat liver. Berger H, Huang RC, Irvin JL 1971
The quaternary structure of DNA polymerase epsilon from Saccharomyces cerevisiae. Chilkova O, Jonsson BH, Johansson E 2003
Nucleotide sequence of the Escherichia coli polA gene and primary structure of DNA polymerase I. Joyce CM, Kelley WS, Grindley ND 1982
Studies of the DNA helicase-RNA primase unit from bacteriophage T4. A trinucleotide sequence on the DNA template starts RNA primer synthesis. Cha TA, Alberts BM 1986
In vivo reconstitution of Saccharomyces cerevisiae DNA polymerase epsilon in insect cells. Purification and characterization. Dua R, Levy DL, Li CM, Snow PM, Campbell JL 2002
The delta and delta ' subunits of the DNA polymerase III holoenzyme are essential for initiation complex formation and processive elongation. Song MS, Pham PT, Olson M, Carter JR, Franden MA, Schaaper RM, McHenry CS 2001
Fidelity of nucleotide insertion at 8-oxo-7,8-dihydroguanine by mammalian DNA polymerase delta. Steady-state and pre-steady-state kinetic analysis. Einolf HJ, Guengerich FP 2001
Subunit interactions within the Saccharomyces cerevisiae DNA polymerase epsilon (pol epsilon ) complex. Demonstration of a dimeric pol epsilon. Dua R, Edwards S, Levy DL, Campbell JL 2000
Mechanism of beta clamp opening by the delta subunit of Escherichia coli DNA polymerase III holoenzyme. Stewart J, Hingorani MM, Kelman Z, O'Donnell ME 2001
Distinct roles of the active-site Mg2+ ligands, Asp882 and Asp705, of DNA polymerase I (Klenow fragment) during the prechemistry conformational transitions. Bermek O, Grindley ND, Joyce CM 2011
Replication factor C disengages from proliferating cell nuclear antigen (PCNA) upon sliding clamp formation, and PCNA itself tethers DNA polymerase delta to DNA. Podust VN, Tiwari N, Stephan S, Fanning E 1998
Human DNA polymerase beta recognizes single-stranded DNA using two different binding modes. Rajendran S, Jezewska MJ, Bujalowski W 1998
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Thermodynamics of human DNA ligase I trimerization and association with DNA polymerase beta. Dimitriadis EK, Prasad R, Vaske MK, Chen L, Tomkinson AE, Lewis MS, Wilson SH 1998
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DNA polymerase gamma from Xenopus laevis. II. A 3'----5' exonuclease is tightly associated with the DNA polymerase activity. Insdorf NF, Bogenhagen DF 1989
The nature of the DNA substrate influences pre-catalytic conformational changes of DNA polymerase β. Huang J, Alnajjar KS, Mahmoud MM, Eckenroth BE, Doublie S, Sweasy J 2018
Enzymatic synthesis of deoxyribonucleic acid. XII. A polymer of deoxyguanylate and deoxycytidylate. RADDING CM, JOSSE J, Kornberg A 1962
On the fidelity of DNA replication. The accuracy of T4 DNA polymerases in copying phi X174 DNA in vitro. Kunkel TA, Loeb LA, Goodman MF 1984
Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication. Blanco L, Bernad A, Lázaro JM, Martín G, Garmendia C, Salas M 1989
Enzymatic synthesis of deoxyribonucleic acid. VIII. Frequencies of nearest neighbor base sequences in deoxyribonucleic acid. JOSSE J, KAISER AD, Kornberg A 1961

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